PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G24680.1
Common NameF25P17.2, REM12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 446aa    MW: 50208 Da    PI: 10.1174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G24680.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-1957153299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f +l+++++l+++ l+lp + +++ g++ ++ ++++++de+  rsW + l+++k+s+++++++GW++F+++ng k g ++vFkl+g +++++v+++++
  AT2G24680.1  57 FVALVTASNLRKDALYLPQDLTSSVGLE-RKYREIVVTDERErRSWALDLRFNKSSDTFYISRGWRSFCDENGKKPGGVFVFKLVG-NRETPVLSFCS 152
                  567999****************999887.57789*****5555******************************************9.66669999998 PP

                  S CS
           B3  99 k 99 
                  +
  AT2G24680.1 153 T 153
                  6 PP

2B355.51e-17193286197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f + ++++d+l ++r +lp +f++++g++k++  ++ l  ++gr+We +l  r  sgr+vlt kGWkeF+ angLk+g+ ++++ +  ++++++++++
  AT2G24680.1 193 FMTLTLTHDNLIKSRRYLPLSFTRDNGLDKPG--MIFLLGKTGRKWEANL-LREASGRIVLTgKGWKEFAMANGLKSGELFTLEAIL-EKGTPMLSLV 286
                  6677789999999****************766..8***************.6777777555559********************776.7777887766 PP

3B359.75.1e-19345435499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +ltp+dv + + l+lp +f++++g++k +  + tl  ++ ++W  +l    ksg + l++GWk+F++ang+k+g+++ +++++++++++v+k++++
  AT2G24680.1 345 TLTPEDV-RACTLILPSQFMKANGINKLG--KKTLLGQNRKKWFAYL--LSKSGFVALGSGWKGFCEANGVKTGESFNLEYIDEQDTTPVFKFCSN 435
                  4555555.5678***********999766..67788***********..*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-2049153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-2051153IPR015300DNA-binding pseudobarrel domain
CDDcd100178.39E-1556152No hitNo description
PROSITE profilePS5086314.67756153IPR003340B3 DNA binding domain
PfamPF023621.4E-1757153IPR003340B3 DNA binding domain
SMARTSM010192.2E-3057154IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16186278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-17187275IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-15192285No hitNo description
PfamPF023628.5E-17193286IPR003340B3 DNA binding domain
PROSITE profilePS5086314.593193289IPR003340B3 DNA binding domain
SMARTSM010199.9E-29193289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18334435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-19337435IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-16340434No hitNo description
PROSITE profilePS5086312.266341435IPR003340B3 DNA binding domain
SMARTSM010191.9E-25341436IPR003340B3 DNA binding domain
PfamPF023622.3E-18343435IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MVLNSSDLGP SRCDIRDLPA PSSTNDQGKT ELARKKKVKR SNTEIEADAS SSDNSCFVAL  60
VTASNLRKDA LYLPQDLTSS VGLERKYREI VVTDERERRS WALDLRFNKS SDTFYISRGW  120
RSFCDENGKK PGGVFVFKLV GNRETPVLSF CSTESINDGT QGHKNNKYNC MELKSKKKRM  180
RCRDSTSPSQ NRFMTLTLTH DNLIKSRRYL PLSFTRDNGL DKPGMIFLLG KTGRKWEANL  240
LREASGRIVL TGKGWKEFAM ANGLKSGELF TLEAILEKGT PMLSLVNTQS TNYRSQQGEC  300
SRDSEKESSI CAEPSRGNKK WKATNNRKER RDSSSAIQNR YVTLTLTPED VRACTLILPS  360
QFMKANGINK LGKKTLLGQN RKKWFAYLLS KSGFVALGSG WKGFCEANGV KTGESFNLEY  420
IDEQDTTPVF KFCSNSVEYV KFTSLP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT2G24680
AtGenExpressAT2G24680
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G24680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G24680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069540.0AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180044.20.0B3 domain-containing protein REM12
SwissprotP0CAP40.0REM12_ARATH; B3 domain-containing protein REM12
TrEMBLF4IPS60.0F4IPS6_ARATH; B3 domain-containing protein REM12
STRINGAT2G24680.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]